Rare Gene Defect Causes Fatty Liver in Lean People (Study Finds)

Introduction

You probably think fatty liver disease only strikes people who carry extra weight.

But new research reveals a rare genetic condition called citrin deficiency triggers severe liver fat buildup even in lean individuals.

Hi, I am Abdur, your nutrition coach and today I am going to analyze how mutations in the SLC25A13 gene disrupt liver metabolism and cause fatty liver disease regardless of body weight.

What Exactly Is Citrin Deficiency?

Citrin deficiency stems from mutations in a gene called SLC25A13.

This gene produces a protein that lives inside the mitochondria of your liver cells.

The protein acts like a shuttle, moving molecules called aspartate and glutamate across membranes.

When citrin fails, this shuttle system breaks down completely.

Your cells then face an imbalance in two critical molecules: NADH and NAD+.

This imbalance stalls the process of breaking down sugar for energy, which we call glycolysis.

At the same time, your liver starts making new fat from scratch through a process called de novo lipogenesis.

How Does This Gene Defect Cause Fatty Liver?

Researchers used special knockout cells that lack citrin to study what goes wrong.

They found ammonia levels shoot up inside these cells.

The ratio of NADH to NAD+ becomes severely skewed in the cytosol, which is the fluid inside cells.

This skewed ratio forces glycolysis to slow down dramatically.

Meanwhile, pathways that produce cholesterol and bile acids ramp up significantly.

The ability to burn fatty acids for energy tanks completely.

When researchers gave these cells a compound called nicotinamide riboside, the NADH ratio improved and fat burning increased, though ammonia stayed high.

What Symptoms Appear Across Different Life Stages?

Citrin deficiency unfolds in three distinct phases throughout life.

Newborns develop a condition called neonatal intrahepatic cholestasis, or NICCD.

These babies show low birth weight, enlarged livers, poor bile flow, and fat accumulation in liver tissue.

They often suffer from anemia and dangerously low blood sugar.

Most babies outgrow this phase by age one when fed special lactose-free formulas rich in medium-chain triglycerides.

Between ages one and eleven, some children develop failure to thrive and dyslipidemia, or FTTDCD.

These kids face growth delays, constant fatigue, hypoglycemia, and abnormally high blood lipids.

They naturally shun carbohydrates while craving proteins and fats instead.

By adulthood, some develop citrullinemia type II, or CTLN2, which brings wild ammonia spikes, neuropsychiatric problems, and unexpected weight loss.

Why Do Patients Stay Lean Despite Eating More?

People with citrin deficiency naturally select high-fat, high-protein, low-carb diets.

One study found their energy intake reaches 115 percent of normal Japanese dietary standards.

Yet they avoid becoming overweight, which hints at inefficient carbohydrate metabolism.

Their typical protein to fat to carbohydrate ratio hits 20-22:47-51:28-32.

Female patients lean even more toward fat at 22:53:25, possibly avoiding CTLN2 more often.

This self-selected balance seems to counter the wonky metabolism they inherited from infancy.

Carbohydrates influence food choices most strongly, with females avoiding them most aggressively.

What Treatment Options Show Promise?

Oral aspartate or alanine supplements help curb ammonia by fueling the urea cycle.

These amino acids lower cytosolic NADH through conversion in the gut.

Mouse studies showed glycine plus sucrose spiked ammonia worst.

Ornithine combined with aspartate or alanine tamed ammonia levels best.

For NICCD, doctors prescribe fat-soluble vitamins and zinc supplements.

Severe cases rarely need liver transplants anymore.

CTLN2 now responds to medications like arginine, sodium pyruvate, and MCT oil rather than surgery alone.

Gene therapy research suggests swapping in a similar protein called aralar could restore shuttle activity.

This approach restored function in knockout mice and holds promise for human patients.

The Bottom Line

Citrin deficiency proves that fatty liver disease can strike lean people through pure genetic disruption.

One broken gene creates a lifetime of metabolic chaos, but smart food choices and targeted supplements offer real control.

Do you have questions about citrin deficiency or fatty liver disease? Share your thoughts in the comments below.

References

At NutritionCrown, we use quality and credible sources to ensure our content is accurate and trustworthy. Below are the sources referenced in writing this article:

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About the Author
Abdur Rahman Choudhury Logo V2

Abdur Rahman Choudhury is a nutrition coach with over 7 years of experience in the field of nutrition.

Academic Qualifications

Research Experience

Professional Certifications & Courses

Clinical Experience

  • 7+ years as a nutrition coach
  • Direct experience working with hundreds of patients to improve their health

Abdur currently lives in India and keeps fit by weight training and eating mainly home-cooked meals.

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